s_amino_a Struct Reference

#include <aa.h>

Data Fields
char	name3 [4]
char	code
float	mw
float	volume
float	hydrophobicity
int	charge
int	polarity
int	func_grp

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Detailed Description

A structure for the modelisation of an amino acid

Definition at line 70 of file aa.h.

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Field Documentation

char s_amino_a::name3[4]

name of the amino-acid (3 letter code)

Definition at line 72 of file aa.h.

Referenced by get_aa_name3().

char s_amino_a::code

one letter code for the amino acid

Definition at line 73 of file aa.h.

float s_amino_a::mw

molecular weight of the amino acid

Definition at line 75 of file aa.h.

Referenced by get_aa_mw().

float s_amino_a::volume

volume score for each aa taken from http://www.info.univ-angers.fr/~gh/Idas/proprietes.htm

Definition at line 76 of file aa.h.

Referenced by get_aa_volume_score(), and get_volume_score_from_idx().

float s_amino_a::hydrophobicity

hydrophobicity score for each aa taken from Monera & al. Journal of Protein Science 1, 319-329 (1995)

Definition at line 77 of file aa.h.

Referenced by get_aa_hydrophobicity_score(), and get_hydrophobicity_score_from_idx().

int s_amino_a::charge

crude net charge of each amino acid in pH 7

Definition at line 78 of file aa.h.

Referenced by get_aa_charge(), and get_charge_from_idx().

int s_amino_a::polarity

polarity of each aa taken from http://www.info.univ-angers.fr/~gh/Idas/proprietes.htm

Definition at line 78 of file aa.h.

Referenced by get_aa_polarity(), and get_polarity_from_idx().

int s_amino_a::func_grp

funct. groups of each aa taken from http://www.info.univ-angers.fr/~gh/Idas/proprietes.htm

Definition at line 78 of file aa.h.

Referenced by get_aa_func_grp(), and get_func_grp_from_idx().

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The documentation for this struct was generated from the following file:

• aa.h